E. V. Khrenova: search on Z-Library

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1

Improving the Design of the Triple-Decker Motif in Red Fluorescent Proteins

Khrenova, Maria G., Polyakov, Igor V., Grigorenko, Bella L, Krylov, Anna I., Nemukhin, Alexander V.

Journal:

Journal of Physical Chemistry B

Year:

2017

Language:

english

File:

PDF, 2.15 MB

english, 2017

2

Synthesis of unsaturated polyesters from maleic anhydride and isobutylene oxide

A.Kh. Bulai, I.Ya. Slonim, D.Ya. Filippenko, N.V. Khrenova

Journal:

Polymer Science U.S.S.R.

Year:

1988

Language:

english

File:

PDF, 288 KB

english, 1988

3

Testing the ability of rhodanine and 2, 4-thiazolidinedione to interact with the human pancreatic alpha-amylase: electron-density descriptors complement molecular docking, QM, and QM/MM dynamics calculations

Devi, Rajendran Niranjana, Khrenova, Maria G., Israel, Samuel, Anzline, Chellam, Astakhov, Andrey A., Tsirelson, Vladimir G.

Journal:

Journal of Molecular Modeling

Year:

2017

Language:

english

File:

PDF, 4.95 MB

english, 2017

4

Evaluation of the Q y absorption band maximum in a light-harvesting complex of the bacterial photosynthetic center Thermochromatium tepidum

Polyakov, I. V., Khrenova, M. G., Moskovskii, A. A., Telegin, P. N., Zhang, J.-P., Nemukhin, A. V.

Journal:

Moscow University Chemistry Bulletin

Year:

2017

Language:

english

File:

PDF, 467 KB

english, 2017

5

Computational Challenges in Modeling of Representative Bioimaging Proteins: GFP-Like Proteins, Flavoproteins, and Phytochromes

Nemukhin, Alexander V., Grigorenko, Bella L, Khrenova, Maria G., Krylov, Anna I.

Journal:

Journal of Physical Chemistry B

Year:

2019

Language:

english

File:

PDF, 3.02 MB

english, 2019

6

Thermodynamics of complex formation of Cu(II) ethylenediaminetetraacetate with ethylenediamine in aqueous solution

D. F. Pyreu, E. V. Khrenova, E. V. Kozlovskii

Journal:

Russian Journal of Coordination Chemistry

Year:

2008

Language:

english

File:

PDF, 222 KB

english, 2008

7

Computational characterization of the all-atom structure and the calcium binding sites of the LH1–RC core complex from Thermochromatium tepidum

Khrenova, M. G., Grigorenko, B. L., Zhang, J.-P., Wang, P., Nemukhin, A. V.

Journal:

Journal of Theoretical and Computational Chemistry

Year:

2016

Language:

english

File:

PDF, 370 KB

english, 2016

8

Aspartoacylase: a central nervous system enzyme. Structure, catalytic activity and regulation mechanisms

Kots, E D, Khrenova, M G, Nemukhin, A V, Varfolomeev, S D

Journal:

Russian Chemical Reviews

Year:

2019

Language:

english

File:

PDF, 3.91 MB

english, 2019

9

The photoreaction mechanism in the bacterial blue light receptor BLUF according to metadynamics modeling

Khrenova, M. G., Nikiforov, A. A., Andrijchenko, N. N., Mironov, V. A., Nemukhin, A. V.

Journal:

Moscow University Chemistry Bulletin

Year:

2014

Language:

english

File:

PDF, 191 KB

english, 2014

10

Simulation of Spectra of Red Fluorescent Protein Mutants

Kulakova, A. M., Khrenova, M. G., Nemukhin, A. V.

Journal:

Moscow University Chemistry Bulletin

Year:

2018

Language:

english

File:

PDF, 470 KB

english, 2018

11

Modeling the mechanism of hydrolysis of cyclic guanosine monophosphates in aqueous solution

N. N. Andriichenko, M. G. Khrenova, A. V. Nemukhin, B. L. Grigorenko

Journal:

Moscow University Chemistry Bulletin

Year:

2011

Language:

english

File:

PDF, 387 KB

english, 2011

12

Towards first-principles calculation of electronic excitations in the ring of the protein-bound bacteriochlorophylls

Polyakov, Igor V., Khrenova, Maria G., Moskovsky, Alexander A., Shabanov, Boris M., Nemukhin, Alexander V.

Journal:

Chemical Physics

Year:

2018

Language:

english

File:

PDF, 2.26 MB

english, 2018

13

Monomerization of the photoconvertible fluorescent protein SAASoti by rational mutagenesis of single amino acids

Solovyev, Ilya D., Gavshina, Alexandra V., Katti, Aditya S., Chizhik, Alexey I., Vinokurov, Leonid M., Lapshin, Grigory D., Ivashina, Tatiana V., Khrenova, Maria G., Kireev, Igor I., Gregor, Ingo, End

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 3.47 MB

english, 2018

14

Modeling reaction routes from rhodopsin to bathorhodopsin

M. G. Khrenova, A. V. Bochenkova, A. V. Nemukhin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 262 KB

english, 2010

15

Loss-of-function polymorphisms in the filaggrin gene are associated with an increased susceptibility to chronic irritant contact dermatitis: a case–control study

C.M. De Jongh, L. Khrenova, M.M. Verberk, F. Calkoen, F.J.H. Van Dijk, H. Voss, S.M. John, S. Kezic

Journal:

British Journal of Dermatology

Year:

2008

Language:

english

File:

PDF, 103 KB

english, 2008

16

Studies on the conformational state of the chromophore group (11-cis-retinal) in rhodopsin by computer molecular simulation methods

T. B. Feldman, Kh. T. Kholmurodov, M. A. Ostrovsky, M. G. Khrenova, A. V. Nemukhin

Journal:

Year:

2009

Language:

english

File:

PDF, 231 KB

english, 2009

17

Competition between two cysteines in covalent binding of biliverdin to phytochrome domains

Khrenova, Maria G., Kulakova, Anna M., Nemukhin, Alexander V.

Journal:

Organic & Biomolecular Chemistry

Year:

2018

Language:

english

File:

PDF, 1.98 MB

english, 2018

18

Ionic liquid based on a quaternary phosphonium cation as a plasticizer and an electrode-active component of ion-selective electrode membranes

D. V. Chernyshev, M. G. Khrenova, I. V. Pletnev, V. E. Baulin, N. V. Shvedene

Journal:

Moscow University Chemistry Bulletin

Year:

2007

Language:

english

File:

PDF, 137 KB

english, 2007

19

Determination of thiamine bromide by the method of amperometric titration

D. Kh. Khrenova, Yu. V. Tsukanov, L. I. Brutko, Z. A. Gallai, N. M. Sheina

Journal:

Pharmaceutical Chemistry Journal

Year:

1980

Language:

english

File:

PDF, 250 KB

english, 1980

20

A Light-Induced Reaction with Oxygen Leads to Chromophore Decomposition and Irreversible Photobleaching in GFP-Type Proteins

Grigorenko, Bella L., Nemukhin, Alexander V., Polyakov, Igor V., Khrenova, Maria G., Krylov, Anna I.

Journal:

Journal of Physical Chemistry B

Year:

2015

Language:

english

File:

PDF, 1.56 MB

english, 2015

21

Reaction Mechanism of Guanosine Triphosphate Hydrolysis by the Vision-Related Protein Complex Arl3–RP2

Khrenova, Maria G., Kots, Ekaterina D., Nemukhin, Alexander V.

Journal:

Journal of Physical Chemistry B

Year:

2016

Language:

english

File:

PDF, 4.66 MB

english, 2016

22

Modeling GTP hydrolysis in RasGAP protein complex

Khrenova, M. G., Kots, E. D., Kulakova, A. M., Polyakov, I. V.

Journal:

Moscow University Chemistry Bulletin

Year:

2016

Language:

english

File:

PDF, 447 KB

english, 2016

23

Intermediates of the Autocatalytic Reaction of the Formation of a Chromophore in a Green Fluorescent Protein

Grigorenko, B. L., Khrenova, M. G., Kulakova, A. M., Nemukhin, A. V.

Journal:

Russian Journal of Physical Chemistry B, Focus on Physics

Year:

2020

File:

PDF, 669 KB

2020

24

Algorithms of the flexible effective fragment method used for modeling of transformations in enzyme active sites

A. V. Nemukhin, B. L. Grigorenko, I. V. Polyakov, D. I. Morozov, M. G. Khrenova

Journal:

Moscow University Chemistry Bulletin

Year:

2010

Language:

english

File:

PDF, 130 KB

english, 2010

25

Quantum chemical modeling of components of dye-sensitized solar cells

I. V. Polyakov, A. A. Moskovskii, M. G. Khrenova…

Journal:

Moscow University Chemistry Bulletin

Year:

2013

Language:

english

File:

PDF, 113 KB

english, 2013

26

Computational characterization of the chemical step in the GTP hydrolysis by Ras-GAP for the wild-type and G13V mutated Ras

Mironov, Vladimir A., Khrenova, Maria G., Lychko, Leonora A., Nemukhin, Alexander V

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.33 MB

english, 2015

27

Why does mutation of Gln61 in Ras by the nitro analog NGln maintain activity of Ras-GAP in hydrolysis of guanosine triphosphate?

Khrenova, Maria G., Grigorenko, Bella L., Mironov, Vladimir A., Nemukhin, Alexander V.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 735 KB

english, 2015

28

Thermodynamics of the formation of Cu2+–glycyl-glycyl-glycine complex in water–ethanol solutions at 298 K

Pham Thi, L., Usacheva, T. R., Tukumova, N. V., Koryshev, N. E., Khrenova, T. M., Sharnin, V. A.

Journal:

Russian Journal of Physical Chemistry A, Focus on Chemistry

Year:

2016

Language:

english

File:

PDF, 171 KB

english, 2016

29

Molecular mechanism of the dark-state recovery in BLUF photoreceptors

Khrenova, Maria G., Domratcheva, Tatiana, Nemukhin, Alexander V.

Journal:

Chemical Physics Letters

Year:

2017

Language:

english

File:

PDF, 1.21 MB

english, 2017

30

Amide-imide tautomerization in the glutamine side chain in enzymatic and photochemical reactions in proteins

Grigorenko, Bella L, Khrenova, Maria, Nemukhin, Alexander

Journal:

Physical Chemistry Chemical Physics

Year:

2018

Language:

english

File:

PDF, 1.55 MB

english, 2018

31

Allosteric Control of N-Acetyl-Aspartate Hydrolysis by the Y231C and F295S Mutants of Human Aspartoacylase

Kots, Ekaterina D, Khrenova, Maria G., Nemukhin, Alexander V.

Journal:

Journal of Chemical Information and Modeling

Year:

2018

Language:

english

File:

PDF, 2.07 MB

english, 2018

32

Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase

Tikhonova, Tamara V., Sorokin, Dimitry Y., Hagen, Wilfred R., Khrenova, Maria G., Muyzer, Gerard, Rakitina, Tatiana V., Shabalin, Ivan G., Trofimov, Anton A., Tsallagov, Stanislav I., Popov, Vladimir

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

Language:

english

File:

PDF, 1.43 MB

english, 2020

33

Revealing electronic features governing hydrolysis of cephalosporins in the active site of the L1 metallo-Î²-lactamase

Levina, Elena O., Khrenova, Maria G., Astakhov, Andrey A., Tsirelson, Vladimir G.

Journal:

Year:

2020

File:

PDF, 1.32 MB

2020

34

Harnack inequality for a class of second-order degenerate elliptic equations

Yu. A. Alkhutov, E. A. Khrenova

Journal:

Proceedings of the Steklov Institute of Mathematics

Year:

2012

Language:

english

File:

PDF, 1.14 MB

english, 2012

35

Molecular model of LH1 light-harvesting complex of the photosynthetic center ofThermochromatium tepidumbacteria

M. G. Khrenova, I. V. Polyakov, B. L. Grigorenko…

Journal:

Moscow University Chemistry Bulletin

Year:

2013

Language:

english

File:

PDF, 304 KB

english, 2013

36

Quantum chemistry in studies of fluorescent and photosensing proteins

Nemukhin, Alexander, Topol, Igor, Collins, Jack, Khrenova, Maria

Journal:

International Journal of Quantum Chemistry

Year:

2013

Language:

english

File:

PDF, 417 KB

english, 2013

37

Catalytic Cycle of Penicillin Acylase from Escherichia coli : QM/MM Modeling of Chemical Transformations in the Enzyme Active Site upon Penicillin G Hydrolysis

Grigorenko, Bella L., Khrenova, Maria G., Nilov, Dmitry K., Nemukhin, Alexander V., Švedas, Vytas K.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.66 MB

english, 2014

38

Computer modeling of components of photoreceptor systems

Nemukhin, A. V., Khrenova, M. G., Polyakov, I. V., Grigorenko, B. L., Moscovsky, A. A.

Journal:

Russian Chemical Bulletin

Year:

2014

Language:

english

File:

PDF, 714 KB

english, 2014

39

Methodological aspects of the calculation of the free energy profile of guanosine triphosphate hydrolysis by Ras-GAP protein complex

Mironov, V. A., Lychko, L. A., Khrenova, M. G.

Journal:

Moscow University Chemistry Bulletin

Year:

2016

Language:

english

File:

PDF, 290 KB

english, 2016

40

The N···H hydrogen bond strength in the transition state at the limiting step determines the reactivity of cephalosporins in the active site of L1 metallo-β-lactamase

Khrenova, Maria G., Tsirelson, Vladimir G.

Journal:

Mendeleev Communications

Year:

2019

Language:

english

File:

PDF, 460 KB

english, 2019

41

Size Effect during Ignition of a Condensed Material by a Light Pulse

R. S. Burkina, V. V. Medvedev, O. V. Khrenova

Journal:

Combustion, Explosion, and Shock Waves

Year:

2010

Language:

english

File:

PDF, 674 KB

english, 2010

42

Hydrolysis of Guanosine Triphosphate (GTP) by the Ras·GAP Protein Complex: Reaction Mechanism and Kinetic Scheme

Khrenova, Maria G., Grigorenko, Bella L., Kolomeisky, Anatoly B., Nemukhin, Alexander V.

Journal:

Journal of Physical Chemistry B

Year:

2015

Language:

english

File:

PDF, 1.79 MB

english, 2015

43

Theoretical vibrational spectroscopy of intermediates and the reaction mechanism of the guanosine triphosphate hydrolysis by the protein complex Ras-GAP

Khrenova, Maria G., Grigorenko, Bella L., Nemukhin, Alexander V.

Journal:

Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy

Year:

2016

Language:

english

File:

PDF, 1.28 MB

english, 2016

44

Benchmark studies of hydrogen bond governing reactivity of cephalosporins in L1 metalloâÎ²âlactamase: Efficient and reliable QSPR equations

Khrenova, Maria G., Levina, Elena O., Tsirelson, Vladimir G.

Journal:

International Journal of Quantum Chemistry

Year:

2020

File:

PDF, 3.99 MB

2020

45

Coupling between the BLUF and EAL domains in the blue light-regulated phosphodiesterase BlrP1

Maria Khrenova, Tatiana Domratcheva, Bella Grigorenko, Alexander Nemukhin

Journal:

Journal of Molecular Modeling

Year:

2011

Language:

english

File:

PDF, 477 KB

english, 2011

46

Exploration of the Zinc Finger Motif in Controlling Activity of Matrix Metalloproteinases

Khrenova, Maria G., Savitsky, Alexander P., Topol, Igor A., Nemukhin, Alexander V.

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 1.91 MB

english, 2014

47

Reconstructing the Electron Density of Intermediates of the Hydrolysis of N-Acetylaspartate by Aspartoacylase

Khrenova, M. G., Kots, E. D., Kulakova, A. M., Nemukhin, A. V.

Journal:

Russian Journal of Physical Chemistry A, Focus on Chemistry

Year:

2019

Language:

english

File:

PDF, 1.45 MB

english, 2019

48

Effect of Substituents in Hydrolyzed Cephalosporins on Intramolecular OâHÂ·Â·Â·N Bond

Levina, E. O., Khrenova, M. G., Tsirelson, V. G.

Journal:

Russian Journal of Physical Chemistry A, Focus on Chemistry

Year:

2020

File:

PDF, 847 KB

2020

49

The interaction of hafnium with oxygen

L. T. Gordeeva, E. F. Pakhomova, E. P. Khrenova

Journal:

Metal Science and Heat Treatment

Year:

1972

Language:

english

File:

PDF, 470 KB

english, 1972

50

Molecular Mechanism of Stereospecificity toward D-Leucine of the Transaminase from Desulfohalobium retbaense Revealed by Molecular Dynamic Simulations

Khrenova, M. G., Zavyalova, S. A., Bezsudnova, E. Yu.

Journal:

Moscow University Chemistry Bulletin

Year:

2020

File:

PDF, 529 KB

2020

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